Detailed information of SNP:



SNP ID: sf0314898229(Gbrowse)

Chromosome: chr03

Position: 14898229
Major allele: T

Minor allele: C

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1419 64.34% 35.66%
All Indica799 99.50% 0.50%
All Japonica497 14.49% 85.51%
Aus67 23.88% 76.12%
Indica I375 99.73% 0.27%
Indica II213 99.06% 0.94%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica335 2.09% 97.91%
Tropical Japonica94 57.45% 42.55%
Japonica Intermediate68 16.18% 83.82%
Group VI/Aromatic14 57.14% 42.86%
Intermediate42 52.38% 47.62%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0314898229 C->T INTERGENIC None