Detailed information of SNP:
SNP ID:
sf0314898229(Gbrowse)
Chromosome: chr03 Position: 14898229 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1419 | 64.34% | 35.66% |
All Indica | 799 | 99.50% | 0.50% |
All Japonica | 497 | 14.49% | 85.51% |
Aus | 67 | 23.88% | 76.12% |
Indica I | 375 | 99.73% | 0.27% |
Indica II | 213 | 99.06% | 0.94% |
Indica Intermediate | 211 | 99.53% | 0.47% |
Temperate Japonica | 335 | 2.09% | 97.91% |
Tropical Japonica | 94 | 57.45% | 42.55% |
Japonica Intermediate | 68 | 16.18% | 83.82% |
Group VI/Aromatic | 14 | 57.14% | 42.86% |
Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0314898229 | C->T | INTERGENIC | None |