Detailed information of SNP:
|
SNP ID:
sf0314903075(Gbrowse)
Chromosome: chr03 Position: 14903075 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 65.61% | 34.39% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 468 | 15.38% | 84.62% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 310 | 1.94% | 98.06% |
| Tropical Japonica | 92 | 59.78% | 40.22% |
| Japonica Intermediate | 66 | 16.67% | 83.33% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314903075 | G->A | LOC_Os03g26000(LOC_Os03g26000.1) | UTR_3_PRIME |