Detailed information of SNP:
|
SNP ID:
sf0314907860(Gbrowse)
Chromosome: chr03 Position: 14907860 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 73.93% | 26.07% |
| All Indica | 784 | 56.12% | 43.88% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 366 | 41.53% | 58.47% |
| Indica II | 213 | 66.20% | 33.80% |
| Indica Intermediate | 205 | 71.71% | 28.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314907860 | G->A | INTERGENIC | None |