Detailed information of SNP:
|
SNP ID:
sf0314908892(Gbrowse)
Chromosome: chr03 Position: 14908892 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 72.70% | 27.30% |
| All Indica | 795 | 54.21% | 45.79% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 371 | 38.54% | 61.46% |
| Indica II | 213 | 65.73% | 34.27% |
| Indica Intermediate | 211 | 70.14% | 29.86% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314908892 | C->T | LOC_Os03g26020(LOC_Os03g26020.1) | Synonymous |