Detailed information of SNP:
|
SNP ID:
sf0314909318(Gbrowse)
Chromosome: chr03 Position: 14909318 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 62.70% | 37.30% |
| All Indica | 795 | 51.32% | 48.68% |
| All Japonica | 497 | 85.71% | 14.29% |
| Aus | 62 | 33.87% | 66.13% |
| Indica I | 374 | 65.78% | 34.22% |
| Indica II | 213 | 40.38% | 59.62% |
| Indica Intermediate | 208 | 36.54% | 63.46% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314909318 | C->T | LOC_Os03g26020(LOC_Os03g26020.1) | Synonymous |