Detailed information of SNP:
|
SNP ID:
sf0314909926(Gbrowse)
Chromosome: chr03 Position: 14909926 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 61.57% | 38.43% |
| All Indica | 794 | 50.38% | 49.62% |
| All Japonica | 496 | 85.89% | 14.11% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 373 | 64.61% | 35.39% |
| Indica II | 211 | 38.39% | 61.61% |
| Indica Intermediate | 210 | 37.14% | 62.86% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314909926 | A->G | LOC_Os03g26020(LOC_Os03g26020.1) | Non-Synonymous SNP |