Detailed information of SNP:
|
SNP ID:
sf0314911261(Gbrowse)
Chromosome: chr03 Position: 14911261 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 73.43% | 26.57% |
| All Indica | 795 | 55.47% | 44.53% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 372 | 40.05% | 59.95% |
| Indica II | 213 | 67.14% | 32.86% |
| Indica Intermediate | 210 | 70.95% | 29.05% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314911261 | G->A | LOC_Os03g26020(LOC_Os03g26020.1) | INTRON |