Detailed information of SNP:
|
SNP ID:
sf0314924086(Gbrowse)
Chromosome: chr03 Position: 14924086 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 67.87% | 32.13% |
| All Indica | 796 | 53.27% | 46.73% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 36.90% | 63.10% |
| Indica II | 213 | 65.26% | 34.74% |
| Indica Intermediate | 209 | 70.33% | 29.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314924086 | C->T | LOC_Os03g26044(LOC_Os03g26044.1) | UTR_3_PRIME |