Detailed information of SNP:
|
SNP ID:
sf0314942080(Gbrowse)
Chromosome: chr03 Position: 14942080 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 66.12% | 33.88% |
| All Indica | 796 | 95.60% | 4.40% |
| All Japonica | 497 | 14.89% | 85.11% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 94.12% | 5.88% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314942080 | C->T | INTERGENIC | None |