Detailed information of SNP:
|
SNP ID:
sf0314943924(Gbrowse)
Chromosome: chr03 Position: 14943924 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 68.54% | 31.46% |
| All Indica | 790 | 99.49% | 0.51% |
| All Japonica | 497 | 15.09% | 84.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 99.46% | 0.54% |
| Indica II | 209 | 99.04% | 0.96% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314943924 | T->C | INTERGENIC | None |