Detailed information of SNP:
|
SNP ID:
sf0314965745(Gbrowse)
Chromosome: chr03 Position: 14965745 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1319 | 93.10% | 6.90% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 397 | 77.83% | 22.17% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 241 | 68.88% | 31.12% |
| Tropical Japonica | 91 | 94.51% | 5.49% |
| Japonica Intermediate | 65 | 87.69% | 12.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314965745 | G->T | INTERGENIC | None |