Detailed information of SNP:
|
SNP ID:
sf0314967645(Gbrowse)
Chromosome: chr03 Position: 14967645 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 64.30% | 35.70% |
| All Indica | 796 | 62.56% | 37.44% |
| All Japonica | 487 | 77.00% | 23.00% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 373 | 48.26% | 51.74% |
| Indica II | 212 | 63.68% | 36.32% |
| Indica Intermediate | 211 | 86.73% | 13.27% |
| Temperate Japonica | 329 | 86.63% | 13.37% |
| Tropical Japonica | 91 | 70.33% | 29.67% |
| Japonica Intermediate | 67 | 38.81% | 61.19% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314967645 | T->A | INTERGENIC | None |