Detailed information of SNP:
|
SNP ID:
sf0314968436(Gbrowse)
Chromosome: chr03 Position: 14968436 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 55.36% | 44.64% |
| All Indica | 799 | 38.80% | 61.20% |
| All Japonica | 497 | 86.12% | 13.88% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 51.47% | 48.53% |
| Indica II | 213 | 39.44% | 60.56% |
| Indica Intermediate | 211 | 15.64% | 84.36% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314968436 | C->T | INTERGENIC | None |