Detailed information of SNP:
|
SNP ID:
sf0314968861(Gbrowse)
Chromosome: chr03 Position: 14968861 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 64.48% | 35.52% |
| All Indica | 799 | 46.43% | 53.57% |
| All Japonica | 497 | 88.33% | 11.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 58.93% | 41.07% |
| Indica II | 213 | 45.54% | 54.46% |
| Indica Intermediate | 211 | 25.12% | 74.88% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314968861 | A->C | INTERGENIC | None |