Detailed information of SNP:
|
SNP ID:
sf0314970429(Gbrowse)
Chromosome: chr03 Position: 14970429 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1234 | 98.46% | 1.54% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 317 | 94.01% | 5.99% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 174 | 90.23% | 9.77% |
| Tropical Japonica | 85 | 100.00% | 0.00% |
| Japonica Intermediate | 58 | 96.55% | 3.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314970429 | G->T | INTERGENIC | None |