Detailed information of SNP:
|
SNP ID:
sf0314983405(Gbrowse)
Chromosome: chr03 Position: 14983405 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 63.51% | 36.49% |
| All Indica | 784 | 45.41% | 54.59% |
| All Japonica | 496 | 87.10% | 12.90% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 57.61% | 42.39% |
| Indica II | 209 | 44.02% | 55.98% |
| Indica Intermediate | 207 | 25.12% | 74.88% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 48.39% | 51.61% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314983405 | C->A | INTERGENIC | None |