Detailed information of SNP:
|
SNP ID:
sf0314983744(Gbrowse)
Chromosome: chr03 Position: 14983744 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 60.73% | 39.27% |
| All Indica | 796 | 41.83% | 58.17% |
| All Japonica | 497 | 85.92% | 14.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 55.20% | 44.80% |
| Indica II | 212 | 40.57% | 59.43% |
| Indica Intermediate | 209 | 19.14% | 80.86% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 42.55% | 57.45% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314983744 | A->G | INTERGENIC | None |