Detailed information of SNP:
|
SNP ID:
sf0314987049(Gbrowse)
Chromosome: chr03 Position: 14987049 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 62.16% | 37.84% |
| All Indica | 795 | 60.38% | 39.62% |
| All Japonica | 497 | 74.04% | 25.96% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 372 | 46.51% | 53.49% |
| Indica II | 212 | 61.32% | 38.68% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 82.69% | 17.31% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0314987049 | G->C | INTERGENIC | None |