Detailed information of SNP:
|
SNP ID:
sf0315002149(Gbrowse)
Chromosome: chr03 Position: 15002149 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 50.28% | 49.72% |
| All Indica | 799 | 38.42% | 61.58% |
| All Japonica | 496 | 64.52% | 35.48% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 51.47% | 48.53% |
| Indica II | 213 | 38.97% | 61.03% |
| Indica Intermediate | 211 | 14.69% | 85.31% |
| Temperate Japonica | 335 | 81.19% | 18.81% |
| Tropical Japonica | 93 | 33.33% | 66.67% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315002149 | A->G | LOC_Os03g26220(LOC_Os03g26220.1) | INTRON |