Detailed information of SNP:



SNP ID: sf0315003335(Gbrowse)

Chromosome: chr03

Position: 15003335
Major allele: A

Minor allele: T

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of T(minor allele)
All1416 78.67% 21.33%
All Indica799 100.00% 0.00%
All Japonica494 40.28% 59.72%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica332 18.67% 81.33%
Tropical Japonica94 89.36% 10.64%
Japonica Intermediate68 77.94% 22.06%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 85.71% 14.29%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0315003335 A->T INTERGENIC None