Detailed information of SNP:
|
SNP ID:
sf0315003861(Gbrowse)
Chromosome: chr03 Position: 15003861 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 50.35% | 49.65% |
| All Indica | 799 | 38.55% | 61.45% |
| All Japonica | 496 | 64.11% | 35.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 51.73% | 48.27% |
| Indica II | 213 | 38.50% | 61.50% |
| Indica Intermediate | 211 | 15.17% | 84.83% |
| Temperate Japonica | 334 | 80.84% | 19.16% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315003861 | A->G | INTERGENIC | None |