Detailed information of SNP:
|
SNP ID:
sf0315004248(Gbrowse)
Chromosome: chr03 Position: 15004248 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 50.04% | 49.96% |
| All Indica | 796 | 38.19% | 61.81% |
| All Japonica | 496 | 63.91% | 36.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 51.47% | 48.53% |
| Indica II | 210 | 37.62% | 62.38% |
| Indica Intermediate | 211 | 15.17% | 84.83% |
| Temperate Japonica | 334 | 80.84% | 19.16% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315004248 | T->C | INTERGENIC | None |