Detailed information of SNP:



SNP ID: sf0315004656(Gbrowse)

Chromosome: chr03

Position: 15004656
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1416 50.49% 49.51%
All Indica798 38.60% 61.40%
All Japonica496 64.52% 35.48%
Aus67 98.51% 1.49%
Indica I374 51.60% 48.40%
Indica II213 38.97% 61.03%
Indica Intermediate211 15.17% 84.83%
Temperate Japonica335 81.19% 18.81%
Tropical Japonica93 33.33% 66.67%
Japonica Intermediate68 25.00% 75.00%
Group VI/Aromatic14 14.29% 85.71%
Intermediate41 46.34% 53.66%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0315004656 T->C LOC_Os03g26229(LOC_Os03g26229.1) UTR_5_PRIME