Detailed information of SNP:
|
SNP ID:
sf0315004656(Gbrowse)
Chromosome: chr03 Position: 15004656 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 50.49% | 49.51% |
| All Indica | 798 | 38.60% | 61.40% |
| All Japonica | 496 | 64.52% | 35.48% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 51.60% | 48.40% |
| Indica II | 213 | 38.97% | 61.03% |
| Indica Intermediate | 211 | 15.17% | 84.83% |
| Temperate Japonica | 335 | 81.19% | 18.81% |
| Tropical Japonica | 93 | 33.33% | 66.67% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315004656 | T->C | LOC_Os03g26229(LOC_Os03g26229.1) | UTR_5_PRIME |