Detailed information of SNP:
|
SNP ID:
sf0315004903(Gbrowse)
Chromosome: chr03 Position: 15004903 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 51.38% | 48.62% |
| All Indica | 798 | 63.03% | 36.97% |
| All Japonica | 496 | 37.70% | 62.30% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 50.00% | 50.00% |
| Indica II | 213 | 64.32% | 35.68% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 21.19% | 78.81% |
| Tropical Japonica | 93 | 68.82% | 31.18% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315004903 | A->G | LOC_Os03g26229(LOC_Os03g26229.1) | INTRON |