Detailed information of SNP:
|
SNP ID:
sf0315005087(Gbrowse)
Chromosome: chr03 Position: 15005087 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 50.21% | 49.79% |
| All Indica | 799 | 38.30% | 61.70% |
| All Japonica | 496 | 64.52% | 35.48% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 51.47% | 48.53% |
| Indica II | 213 | 38.03% | 61.97% |
| Indica Intermediate | 211 | 15.17% | 84.83% |
| Temperate Japonica | 334 | 81.44% | 18.56% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315005087 | G->A | LOC_Os03g26229(LOC_Os03g26229.1) | INTRON |