Detailed information of SNP:
|
SNP ID:
sf0315005174(Gbrowse)
Chromosome: chr03 Position: 15005174 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 50.32% | 49.68% |
| All Indica | 799 | 38.42% | 61.58% |
| All Japonica | 495 | 64.65% | 35.35% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 51.73% | 48.27% |
| Indica II | 213 | 38.50% | 61.50% |
| Indica Intermediate | 211 | 14.69% | 85.31% |
| Temperate Japonica | 333 | 81.38% | 18.62% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315005174 | C->T | LOC_Os03g26229(LOC_Os03g26229.1) | INTRON |