Detailed information of SNP:
|
SNP ID:
sf0315005687(Gbrowse)
Chromosome: chr03 Position: 15005687 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 50.46% | 49.54% |
| All Indica | 799 | 38.55% | 61.45% |
| All Japonica | 497 | 64.39% | 35.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 52.00% | 48.00% |
| Indica II | 213 | 38.50% | 61.50% |
| Indica Intermediate | 211 | 14.69% | 85.31% |
| Temperate Japonica | 335 | 81.19% | 18.81% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315005687 | A->C | LOC_Os03g26229(LOC_Os03g26229.1) | INTRON |