Detailed information of SNP:
|
SNP ID:
sf0315006917(Gbrowse)
Chromosome: chr03 Position: 15006917 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 50.32% | 49.68% |
| All Indica | 799 | 38.30% | 61.70% |
| All Japonica | 497 | 64.79% | 35.21% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 51.20% | 48.80% |
| Indica II | 213 | 38.97% | 61.03% |
| Indica Intermediate | 211 | 14.69% | 85.31% |
| Temperate Japonica | 335 | 81.79% | 18.21% |
| Tropical Japonica | 94 | 32.98% | 67.02% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315006917 | A->G | INTERGENIC | None |