Detailed information of SNP:



SNP ID: sf0315006917(Gbrowse)

Chromosome: chr03

Position: 15006917
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 50.32% 49.68%
All Indica799 38.30% 61.70%
All Japonica497 64.79% 35.21%
Aus67 97.01% 2.99%
Indica I375 51.20% 48.80%
Indica II213 38.97% 61.03%
Indica Intermediate211 14.69% 85.31%
Temperate Japonica335 81.79% 18.21%
Tropical Japonica94 32.98% 67.02%
Japonica Intermediate68 25.00% 75.00%
Group VI/Aromatic14 14.29% 85.71%
Intermediate42 45.24% 54.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0315006917 A->G INTERGENIC None