Detailed information of SNP:
|
SNP ID:
sf0315009201(Gbrowse)
Chromosome: chr03 Position: 15009201 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 97.01% | 2.99% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 483 | 93.17% | 6.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 328 | 92.68% | 7.32% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 61 | 90.16% | 9.84% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315009201 | A->C | INTERGENIC | None |