Detailed information of SNP:
|
SNP ID:
sf0315042901(Gbrowse)
Chromosome: chr03 Position: 15042901 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1380 | 55.51% | 44.49% |
| All Indica | 768 | 39.32% | 60.68% |
| All Japonica | 493 | 75.25% | 24.75% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 371 | 53.37% | 46.63% |
| Indica II | 203 | 36.95% | 63.05% |
| Indica Intermediate | 194 | 14.95% | 85.05% |
| Temperate Japonica | 335 | 91.04% | 8.96% |
| Tropical Japonica | 91 | 39.56% | 60.44% |
| Japonica Intermediate | 67 | 44.78% | 55.22% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315042901 | G->A | INTERGENIC | None |