Detailed information of SNP:



SNP ID: sf0315062829(Gbrowse)

Chromosome: chr03

Position: 15062829
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1416 95.13% 4.87%
All Indica797 95.61% 4.39%
All Japonica496 93.75% 6.25%
Aus67 100.00% 0.00%
Indica I373 96.25% 3.75%
Indica II213 96.24% 3.76%
Indica Intermediate211 93.84% 6.16%
Temperate Japonica334 91.62% 8.38%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 95.59% 4.41%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0315062829 C->T INTERGENIC None