Detailed information of SNP:
|
SNP ID:
sf0315156600(Gbrowse)
Chromosome: chr03 Position: 15156600 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 53.10% | 46.90% |
| All Indica | 798 | 83.71% | 16.29% |
| All Japonica | 497 | 12.88% | 87.12% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 210 | 78.10% | 21.90% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315156600 | T->C | INTERGENIC | None |