Detailed information of SNP:
|
SNP ID:
sf0315156620(Gbrowse)
Chromosome: chr03 Position: 15156620 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 53.14% | 46.86% |
| All Indica | 798 | 83.58% | 16.42% |
| All Japonica | 496 | 12.90% | 87.10% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 85.33% | 14.67% |
| Indica II | 213 | 85.92% | 14.08% |
| Indica Intermediate | 210 | 78.10% | 21.90% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 51.61% | 48.39% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315156620 | A->G | INTERGENIC | None |