Detailed information of SNP:
|
SNP ID:
sf0315163669(Gbrowse)
Chromosome: chr03 Position: 15163669 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 93.72% | 6.28% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 497 | 89.34% | 10.66% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315163669 | G->A | INTERGENIC | None |