Detailed information of SNP:
|
SNP ID:
sf0315177290(Gbrowse)
Chromosome: chr03 Position: 15177290 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 50.72% | 49.28% |
| All Indica | 771 | 21.27% | 78.73% |
| All Japonica | 492 | 88.41% | 11.59% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 367 | 21.53% | 78.47% |
| Indica II | 198 | 19.19% | 80.81% |
| Indica Intermediate | 206 | 22.82% | 77.18% |
| Temperate Japonica | 334 | 98.50% | 1.50% |
| Tropical Japonica | 91 | 53.85% | 46.15% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315177290 | C->T | INTERGENIC | None |