Detailed information of SNP:
|
SNP ID:
sf0315177496(Gbrowse)
Chromosome: chr03 Position: 15177496 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 89.06% | 10.94% |
| All Indica | 797 | 93.98% | 6.02% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315177496 | C->T | INTERGENIC | None |