Detailed information of SNP:
|
SNP ID:
sf0315177546(Gbrowse)
Chromosome: chr03 Position: 15177546 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 85.19% | 14.81% |
| All Indica | 798 | 93.48% | 6.52% |
| All Japonica | 497 | 84.71% | 15.29% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 94 | 68.09% | 31.91% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315177546 | T->C | LOC_Os03g26570(LOC_Os03g26570.1) | Non-Synonymous SNP |