Detailed information of SNP:
|
SNP ID:
sf0315177707(Gbrowse)
Chromosome: chr03 Position: 15177707 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 54.17% | 45.83% |
| All Indica | 796 | 27.01% | 72.99% |
| All Japonica | 497 | 89.94% | 10.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 25.81% | 74.19% |
| Indica II | 213 | 29.11% | 70.89% |
| Indica Intermediate | 211 | 27.01% | 72.99% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315177707 | C->T | LOC_Os03g26570(LOC_Os03g26570.1) | Synonymous |