Detailed information of SNP:



SNP ID: sf0315177707(Gbrowse)

Chromosome: chr03

Position: 15177707
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1416 54.17% 45.83%
All Indica796 27.01% 72.99%
All Japonica497 89.94% 10.06%
Aus67 100.00% 0.00%
Indica I372 25.81% 74.19%
Indica II213 29.11% 70.89%
Indica Intermediate211 27.01% 72.99%
Temperate Japonica335 98.81% 1.19%
Tropical Japonica94 61.70% 38.30%
Japonica Intermediate68 85.29% 14.71%
Group VI/Aromatic14 85.71% 14.29%
Intermediate42 61.90% 38.10%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0315177707 C->T LOC_Os03g26570(LOC_Os03g26570.1) Synonymous