Detailed information of SNP:
|
SNP ID:
sf0315178380(Gbrowse)
Chromosome: chr03 Position: 15178380 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 98.16% | 1.84% |
| All Indica | 794 | 96.85% | 3.15% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 209 | 93.30% | 6.70% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315178380 | T->C | LOC_Os03g26570(LOC_Os03g26570.1) | INTRON |