Detailed information of SNP:
|
SNP ID:
sf0315178446(Gbrowse)
Chromosome: chr03 Position: 15178446 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 88.02% | 11.98% |
| All Indica | 793 | 92.31% | 7.69% |
| All Japonica | 496 | 94.15% | 5.85% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 211 | 92.89% | 7.11% |
| Indica Intermediate | 207 | 85.99% | 14.01% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315178446 | C->T | LOC_Os03g26570(LOC_Os03g26570.1) | INTRON |