Detailed information of SNP:
|
SNP ID:
sf0315180758(Gbrowse)
Chromosome: chr03 Position: 15180758 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 94.72% | 5.28% |
| All Indica | 784 | 94.39% | 5.61% |
| All Japonica | 495 | 95.15% | 4.85% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 206 | 95.63% | 4.37% |
| Indica Intermediate | 204 | 88.73% | 11.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 76.34% | 23.66% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315180758 | C->T | LOC_Os03g26570(LOC_Os03g26570.1) | Synonymous |