Detailed information of SNP:
|
SNP ID:
sf0315182456(Gbrowse)
Chromosome: chr03 Position: 15182456 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 55.22% | 44.78% |
| All Indica | 798 | 87.22% | 12.78% |
| All Japonica | 497 | 12.88% | 87.12% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 88.27% | 11.73% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315182456 | G->A | INTERGENIC | None |