Detailed information of SNP:
|
SNP ID:
sf0315194823(Gbrowse)
Chromosome: chr03 Position: 15194823 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 60.00% | 40.00% |
| All Indica | 796 | 93.47% | 6.53% |
| All Japonica | 497 | 14.49% | 85.51% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 373 | 95.98% | 4.02% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 55.32% | 44.68% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315194823 | G->A | INTERGENIC | None |