Detailed information of SNP:
|
SNP ID:
sf0315195660(Gbrowse)
Chromosome: chr03 Position: 15195660 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1326 | 51.73% | 48.27% |
| All Indica | 719 | 84.56% | 15.44% |
| All Japonica | 489 | 12.47% | 87.53% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 338 | 87.57% | 12.43% |
| Indica II | 186 | 87.10% | 12.90% |
| Indica Intermediate | 195 | 76.92% | 23.08% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 86 | 51.16% | 48.84% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 38 | 42.11% | 57.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315195660 | T->C | INTERGENIC | None |