Detailed information of SNP:
|
SNP ID:
sf0315208177(Gbrowse)
Chromosome: chr03 Position: 15208177 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 54.29% | 45.71% |
| All Indica | 783 | 86.46% | 13.54% |
| All Japonica | 497 | 12.88% | 87.12% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 366 | 87.16% | 12.84% |
| Indica II | 210 | 91.43% | 8.57% |
| Indica Intermediate | 207 | 80.19% | 19.81% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 52.13% | 47.87% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 39 | 43.59% | 56.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315208177 | A->T | LOC_Os03g26620(LOC_Os03g26620.1) | Non-Synonymous SNP |