Detailed information of SNP:
|
SNP ID:
sf0315223979(Gbrowse)
Chromosome: chr03 Position: 15223979 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 58.18% | 41.82% |
| All Indica | 799 | 91.61% | 8.39% |
| All Japonica | 497 | 14.29% | 85.71% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315223979 | A->G | LOC_Os03g26650(LOC_Os03g26650.2) | UTR_3_PRIME |
| sf0315223979 | A->G | LOC_Os03g26650(LOC_Os03g26650.1) | UTR_3_PRIME |