Detailed information of SNP:
|
SNP ID:
sf0315226984(Gbrowse)
Chromosome: chr03 Position: 15226984 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 90.40% | 9.60% |
| All Indica | 797 | 95.23% | 4.77% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315226984 | G->A | INTERGENIC | None |