Detailed information of SNP:
|
SNP ID:
sf0315227735(Gbrowse)
Chromosome: chr03 Position: 15227735 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 87.65% | 12.35% |
| All Indica | 798 | 96.87% | 3.13% |
| All Japonica | 496 | 84.27% | 15.73% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 93 | 68.82% | 31.18% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315227735 | T->C | INTERGENIC | None |