Detailed information of SNP:
|
SNP ID:
sf0315236816(Gbrowse)
Chromosome: chr03 Position: 15236816 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 96.52% | 3.48% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 489 | 94.68% | 5.32% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 87 | 75.86% | 24.14% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315236816 | G->A | LOC_Os03g26690(LOC_Os03g26690.1) | Synonymous |