Detailed information of SNP:
|
SNP ID:
sf0315239353(Gbrowse)
Chromosome: chr03 Position: 15239353 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 93.56% | 6.44% |
| All Indica | 786 | 92.62% | 7.38% |
| All Japonica | 487 | 95.28% | 4.72% |
| Aus | 60 | 91.67% | 8.33% |
| Indica I | 364 | 88.46% | 11.54% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 84 | 85.71% | 14.29% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0315239353 | C->T | LOC_Os03g26690(LOC_Os03g26690.1) | INTRON |